| U24 |
2024 |
Jeremy Goecks |
Moffitt Cancer Center |
Developing a cancer Galaxy computational workbench to meet emerging cancer data analysis needs |
Active |
| U24 |
2024 |
Paul Macklin, Elana Fertig |
Indiana University; University of Maryland |
Informing mechanistic rules of agent-based models with single-cell multi-omics |
Active |
| U24 |
2024 |
Heng Li, Catarina Campbell, Cheng-Zhong Zhang |
Dana-Farber Cancer Institute; Broad Institute |
Enhancement and further development of informatics methods for long-read cancer sequencing |
Active |
| U01 |
2024 |
Zhiping Wang |
University of Massachusetts Chan Medical School |
Integrative Analysis and Visualization Platform for Cancer Regulatory Genomics |
Active |
| U01 |
2024 |
Johnie Rose |
Case Western Reserve University |
A Multilevel Data Analytic Solution to Advance Population Cancer Research |
Active |
| U01 |
2024 |
Emilie Roncali |
UC Davis |
A liver digital twin for personalized cancer therapy |
Active |
| R21 |
2024 |
Shikhar Uttam |
University of Pittsburgh |
Methods for characterizing mechanobiology of the tumor microenvironment landscape |
Active |
| R21 |
2024 |
Pratik Shah |
UC Irvine |
Virtual Digital Histopathology with Explainable Deep Learning for Prostate Cancer Diagnosis |
Active |
| R21 |
2024 |
Li Chen, Chi Wang |
University of Kentucky |
Statistical Methods for Identification and Evaluation of Predictive Biomarkers in Cancer |
Active |
| U01 |
2024 |
Timothy Griffin, Pratik Jagtap, Alexey Nesvizhskii |
University of Minnesota, University of Michigan |
The immunoPeptidoGenomic (iPepGen) informatics resource forimmuno-oncology research |
Active |
| U24 |
2024 |
Levi Waldron, Sean Davis
|
Graduate School of Public Health and Policy, University of Colorado Denver |
Cancer Genomics: Integrative and Scalable Solutions in R/Bioconductor |
Active |
| U01 |
2024 |
Alexander Krasnitz |
Cold Spring Harbor Laboratory |
Computational tools for accurate inference of genetic ancestry from cancer-derived molecular data |
Active |
| R21 |
2024 |
Dinler Antunes |
University of Houston |
Structure-guided cancer immunotherapy design with HLA-Arena and CrossDome |
Active |
| U01 |
2023 |
Kristen Naegle |
University of Virginia |
Inferring Kinase Activity from Tumor Phosphoproteomic Data |
Active |
| R21 |
2023 |
Fuyong Xing,
Bennett Chin
|
University of Colorado Denver,
Duke University
|
Geles: A Novel Imaging Informatics System for Generalizable Lesion Identification in Neuroendocrine Tumors |
Active |
| U01 |
2023 |
Tin Nguyen,
Hung Luu
|
Auburn University,
University of Pittsburgh
|
Personalization of graphical models using multi-omics data for subtype discovery and prognosis |
Active |
| U01 |
2023 |
Hanspeter Pfister,
Sandro Santagata
|
Harvard Medical School
|
Visual Analytics for Exploration and Hypothesis Generation Using Highly MultiplexedSpatial Data of Tissues and Tumors |
Active |
| R21 |
2023 |
Drew Jones
|
New York University School of Medicine
|
Deep Learning of Mass Spectrometry Imaging |
Active |
| U24 |
2023 |
Dexter Pratt
|
University of California, San Diego
|
The Network Data Exchange - a Network Commons for Biologists |
Active |
| R21 |
2023 |
Matthew Schipper
Daniel Spratt
|
University of Michigan
Case Western Reserve University
|
Individualized estimates of treatment benefit from hormone therapy for men with prostate cancer |
Active |
| U01 |
2023 |
Yufei Huang
|
University of Pittsburgh at Pittsburgh
|
m6A-suite: an informatics pipeline and resource for elucidating roles of m6A epitranscriptome in cancer |
Active |
| U01 |
2023 |
Valsamo Anagnostou
Taxiarchis Botsis
|
Johns Hopkins University
|
Matching genotypes with personalized therapies: Development of a decision support infrastructure to augment the value of precision medicine |
Active |
| U01 |
2023 |
Qi Long
Xiaoqian Jiang
|
University of Pennsylvania
|
Robust privacy preserving distributed analysis platform for cancer research: addressing data bias and disparities |
Active |
| U24 |
2023 |
Gordon J. Harris
|
Massachusetts General Hospital
|
Extensible Open Source Zero-Footprint Web Viewer for Cancer Imaging Research |
Active |
| R21 |
2023 |
Noemi Andor
|
H. Lee Moffitt Cancer Center and Research Institute
|
Engineering model-based systems to monitor and steer subclonal dynamics |
Active |
| R21 |
2023 |
Daniel Segre,
Ilija Dukovski,
Sergeevich Kirill Korolev
|
Boston University - Charles River Campus
|
Spatio-temporal mechanistic modeling of whole-cell tumor metabolism |
Active |
| U24 |
2023 |
Guilherme Del Fiol,
Kensaku Kawamoto
|
University of Utah
|
GARDE: Scalable Clinical Decision Support for Individualized Cancer Risk Management |
Active |
| R21 |
2023 |
Alejandro Bertolet
|
Massachusetts General Hospital
|
GPU-based SPECT Reconstruction Using Reverse Monte Carlo Simulations |
Active |
| U24 |
2023 |
David Hanauer
|
University of Michigan
|
Extending the Capabilities and Reach of EMERSE in Support of Cancer Research |
Active |
| U24 |
2023 |
Spyridon Bakas
|
Indiana University
|
Privacy-Aware Federated Learning for Breast Cancer Risk Assessment |
Active |
| R21 |
2023 |
Matthew Thompson
|
California Institute of Technology
|
Defining therapeutic strategies for boosting T-cell infiltration into cold tumors with spatial proteomics and machine learning |
Active |
| U01 |
2022 |
Brooke L. Fridley
|
H. Lee Moffitt Cancer Center and Research Institute
|
Analytical Tools for Studying the Tumor Microenvironment Leveraging Spatial Transcriptomics |
Active |
| U24 |
2022 |
Avi Ma'ayan
|
Icahn School of Medicine at Mount Sinai
|
ARCHS4: Massive Mining of Publicly Available RNA Sequencing Data |
Active |
| U24 |
2022 |
Veronica Miriam Rotemberg,
Kivanc Kose
|
Sloan - Kettering Institute Cancer Research
|
M-ISIC: A Multimodal Open-Source International Skin Imaging Collaboration Informatics Platform for Automated Skin Cancer Detection |
Active |
| R21 |
2022 |
Prateek Prasanna,
Chao Chen
|
State University New York Stony Brook
|
Computerized platform for interactive annotation and topological characterization of tumor associated vasculature for predicting response to immunotherapy in lung cancer |
Active |
| U24 |
2022 |
Nikolaus Schultz,
Ethan Cerami,
Chris Sander
|
Sloan - Kettering Institute Cancer Research
|
The cBioPortal for Cancer Genomics |
Active |
| U24 |
2022 |
Rachel Karchin
|
Johns Hopkins University
|
OpenCRAVAT: Informatics Tools for High-Throughput Analysis of Cancer Mutations |
Active |
| U01 |
2022 |
Samuel Volchenboum
|
University of Chicago
|
GEARBOx - a multisite clinical trial matching tool for children with relapsed or refractory cancer |
Active |
| R21 |
2022 |
Travis Steele Johnson,
Jie Zhang
|
Indiana University- Purdue University at Indianapolis
|
A deep-transfer-learning framework to transfer clinical information to single cells and spatial locations in cancer tissues |
Active |
| R21 |
2022 |
Jin Zhang
|
Washington University
|
Deep learning in cervical cancer radiogenomics |
Active |
| U01 |
2022 |
Jacob Oleson
|
University of Iowa
|
Development of Small Area Interactive Risk Maps for Cancer Control Efforts |
Active |
| U01 |
2022 |
Patrick David Schloss,
Marcy J. Balunas
|
University of Michigan at Ann Arbor
|
muMS2: an open source R package for analyzing and integrating multi-omics datasets to improve early detection and understanding of colorectal cancer |
Active |
| U24 |
2022 |
Han Liang,
Rehan Akbani,
Gordon B. Mills
|
University of Texas MD Anderson Cancer Center
|
The Cancer Proteome Atlas: an Integrated Bioinformatics Resource for Functional Cancer Proteomic Data |
Active |
| R21 |
2022 |
Meghan Eileen McGrady
|
Cincinnati Children's Hospital Medical Center
|
A Novel Algorithm to Compute Adherence from Electronic Adherence Monitoring Devices |
Active |
| R21 |
2022 |
Mara Meyer Epstein,
Feifan Liu
|
University of Massachusetts Medical School- Worcester
|
Identifying Recurrent Non-Hodgkin Lymphoma in Electronic Health Data |
Active |
| R21 |
2022 |
Travis J. Osterman,
Christine M. Micheel
|
Vanderbilt University Medical Center
|
Oncology Knowledge Rapid Alerts: Integrating Biomarker-Driven Clinical Decision Support for Therapy Selection at Point-of-Care |
Active |
| R21 |
2022 |
Andrey Ivanov
|
Emory University
|
Predicting Actionable Cancer Vulnerabilities Enabled by Mutant-Directed Protein-Protein Interactions |
Active |
| R21 |
2022 |
Margarida Barroso,
Uwe Kruger
|
Albany Medical College
|
Artificial Intelligence Enhanced Cancer Cell Classification Based Organelle Morphology and Topology |
Active |
| U01 |
2022 |
Malgorzata Marjanska
|
University of Minnesota
|
Developing Informatics Tools for Optimized MRS for Brain Cancer Research |
Active |
| U01 |
2022 |
Pablo Gonzalez Camara
|
University of Pennsylvania
|
A Data-Driven Bioinformatics Platform for the Design and Analysis of Multiplexed Antibody-Based Cytometry Experiments in Cancer Research |
Active |
| U24 |
2021 |
Alessandro Sette,
Bjoern Peters
|
La Jolla Institute for Immunology
|
The Cancer Epitope Database And Analysis Resource |
Active |
| U24 |
2021 |
Vineet Bafna
|
University Of California, San Diego
|
Software and algorithms for elucidating the structure, function, and evolution of extrachromosomal DNA |
Active |
| U24 |
2021 |
Daniel Scott Marcus
|
Washington University
|
Sustaining the Integrative Imaging Informatics for Cancer Research (I3CR) Center |
Active |
| U24 |
2021 |
Jill Mesirov,
James Thomas Robinson
|
University Of California, San Diego
|
The Integrative Genomics Viewer (IGV) for Cancer Research |
Active |
| U01 |
2021 |
Michael Schatz
|
Johns Hopkins University
|
Integrative genomic and epigenomic analysis of cancer using long read sequencing |
Active |
| U01 |
2021 |
Lydia Kavraki,
Gregory Lizee
|
Rice University
|
PROTEAN-CR: Proteomics Toolkit for Ensemble Analysis in Cancer Research |
Active |
| U24 |
2021 |
Jingchun Zhu
David H Haussler
|
University of California Santa Cruz
|
Enhance UCSC Xena: extend interactive visualization to ultra-large-scale multi-omics data and integrate with analysis resources |
Active |
| R21 |
2021 |
Yong Zang
|
Indiana Unviersity
|
Curve-free phase I/II clinical trial designs for molecularly targeted agents and immunotherapy |
Complete |
| R21 |
2021 |
Li Zhang
|
University Of California, San Francisco
|
Computational approaches to unravel immune receptor sequencing for cancer immunotherapy |
Complete |
| R21 |
2021 |
Yen-Yi Ho
|
University Of South Carolina At Columbia
|
scDECO: A novel statistical framework to identify differential co-expression gene combinations systematically using single-cell RNA sequencing data |
Complete |
| R21 |
2021 |
Gavin Ha
|
Fred Hutchinson Cancer Research Center
|
Predicting transcriptional signatures and tumor subtypes from circulating tumor DNA |
Complete |
| R21 |
2021 |
Itai Yanai
|
New York University School Of Medicine
|
Inferring cell state tumor microenvironment maps by integrating single-cell and spatial transcriptomics |
Complete |
| U01 |
2021 |
Joshua Campbell,
Masanao Yajima
|
Boston University Medical Campus
|
Utilizing Bayesian modeling to improve mutational signature inference in large-scale datasets |
Complete |
| U01 |
2021 |
Giuseppe Narzisi
|
New York Genome Center
|
Advanced development of Lancet, an emerging tool for complex variant calling in cancer genomics |
Active |
| U24 |
2021 |
Guergana Savova,
Harry Hochheiser,
Jeremy Warner
|
Boston Children's Hospital
|
Cancer Deep Phenotype Extraction from Electronic Medical Records |
Active |
| U01 |
2021 |
Guanghua Xiao
|
UT Southwestern Medical Center
|
Informatics Tools To Analyze And Model Whole Slide Image Data At The Single Cell Level |
Complete |
| R21 |
2021 |
Meliha Yetisgen
|
University of Washington
|
Extraction of Symptom Burden from Clinical Narratives of Cancer Patients using Natural Language Processing |
Complete |
| R21 |
2021 |
Lang Li
|
Ohio State University
|
An informatics bridge over the valley of death for cancer Phase I trials of drug-combination therapies |
Complete |
| R21 |
2021 |
Jiang Bian,
Yi Guo
|
University of Florida
|
Optimizing the Population Representativeness of Older Adults in Cancer Trials |
Complete |
| U24 |
2021 |
Christina Yung,
Lincoln D Stein
|
Ontario Institute For Cancer Research
|
Overture: A Multi-Scale Data Platform for Cancer Genomics Research |
Active |
| U24 |
2020 |
Jill Mesirov,
Pablo Tamayo
|
University of California, San Diego
|
GenePattern and GenePattern Notebook: Integrative 'Omic Analysis for Cancer Research |
Active |
| U01 |
2020 |
Malachi Griffith
|
Washington University in St. Louis
|
Informatics Tools for Identification, Prioritization, and Clinical Application of Neoantigens |
Complete |
| R21 |
2020 |
Clemens Grassberger
|
Massachusetts General Hospital
|
A Computational Method to Calculate the Radiation Dose to Circulating Lymphocytes |
Complete |
| U01 |
2020 |
Elana Judith Fertig
|
Johns Hopkins University
|
Single-cell and imaging data integration software to spatially resolve the tumor microenvironment |
Complete |
| U24 |
2020 |
Philip Montgomery
|
Broad Institute, INC.
|
Advanced development of the Cancer Dependency Map portal (DepMap.org) |
Active |
| U01 |
2020 |
Ken Chen
|
University of Texas MD Anderson Cancer Center
|
Informatics for Functional Integration of Heterogeneous Cancer Genome and Transcriptome Sequencing Data |
Complete |
| U24 |
2020 |
Helen Elizabeth Parkinson,
Terrence Meehan
|
European Molecular Biology Laboratory
|
Patient Derived Cancer Model (PDCM) Finder |
Active |
| U01 |
2020 |
Amanda E Randles
|
Duke University
|
Technology for efficient simulation of cancer cell transport |
Complete |
| R21 |
2020 |
Jennifer Ellen Beane,
Vijaya B Kolachalama
|
Boston University Medical Campus
|
PRISTINE: Pre-cancer histology identification of Endobronchial biopsies using deep learning |
Complete |
| R21 |
2020 |
Hildreth Robert Frost
|
Dartmouth College
|
Cancer-specific gene set testing |
Complete |
| R01 |
2020 |
Chun-Wei Chen
|
Beckman Research Institute/City of Hope
|
Integrative Analyses of Saturation CRISPR Protein Scan |
Complete |
| U24 |
2020 |
Kooresh Isaac Shoghi,
Daniel Scott Marcus
|
Washington University
|
Development of an Open-Source Preclinical Imaging Informatics Platform for Cancer Research |
Active |
| UE5 |
2020 |
Jeffery T Leek,
Jeremy Goecks,
Karriem Sadot Watson,
Sarah J Wheelan
|
Johns Hopkins University,
Oregon Health & Science University
|
Scalable multi-mode education to increase use of ITCR tools by diverse analysts |
Active |
| U24 |
2020 |
Greg Caporaso
|
Northern Arizona University
|
Advancing Our Understanding of Cancer and the Human Microbiome with QIIME 2 |
Active |
| U24 |
2020 |
Benjamin Raphael
|
Princeton University
|
Comprehensive and Robust Tools for Analysis of Tumor Heterogeneity and Evolution |
Active |
| U01 |
2020 |
Satish Viswanath,
Pallavi Tiwari
|
Case Western Reserve University
|
RadxTools for Assessing Tumor Treatment Response on Imaging |
Complete |
| U24 |
2020 |
James Eddy,
Jacob Albrecht,
Paul Christopher Boutros
|
Sage Bionetworks
|
Advancing Method Benchmarking and Data Sharing Through Crowd-Sourced Competitions in Cancer Research |
Active |
| R21 |
2020 |
Subhajyoti De
|
Rutgers Cancer Institute of New Jersey
|
Inference of Tumor Growth Dynamics Using Genomic Data |
Complete |
| U24 |
2019 |
Obi Griffith
|
Washington University
|
Standardized and Genome-Wide Clinical Interpretation of Complex Genotypes for Cancer Precision Medicine |
Active |
| U01 |
2019 |
Bruno De Man
|
General Electric Global Research Center
|
Open-Access X-Ray and CT Simulation Toolkit for Research in Cancer Imaging and Dosimetry |
Complete |
| R21 |
2019 |
Jin Chen,
Guo-Qiang Zhang,
Baowei Fei
|
University of Kentucky,
The University Texas at Dallas
|
STAN-CT: Standardization and Normalization of CT images for Lung Cancer Patients |
Complete |
| R21 |
2019 |
Tianxi Cai
|
Harvard University School of Public Health
|
Semi-supervised Algorithms for Risk Assessment with Noisy EHR Data |
Complete |
| R21 |
2019 |
Suvra Pal,
Leili Shahriyari,
Souvik Roy
|
University of Texas Arlington,
University of Massachusetts Amherst
|
Data-Driven QSP Software for Personalized Colon Cancer Treatment |
Complete |
| U01 |
2019 |
Jun Kong,
Fusheng Wang
|
Georgia State University
|
Computational Pathology Software for Integrative Cancer Research with Three-Dimensional Digital Slides |
Complete |
| U01 |
2019 |
Spyridon Bakas
|
University of Pennsylvania
|
The Federated Tumor Segmentation (FeTS) Platform: An Intuitive Tool Facilitating Secure Multi-Institutional Collaboration |
Complete |
| U24 |
2019 |
John Quackenbush
|
Harvard School of Public Health
|
WebMeV: A Robust Platform for Intuitive Genomic Data Analysis |
Complete |
| U01 |
2019 |
Melissa Cline
|
University of California, Santa Cruz
|
Eliminating Variants of Uncertain Significance in BRCA1, BRCA2 and Beyond |
Complete |
| U01 |
2019 |
Daniel Rubin,
Jayashree Kalpathy-Cramer
|
Stanford University,
Massachusetts General Hospital
|
Distributed Learning of Deep Learning Models for Cancer Research |
Complete |
| U01 |
2019 |
Wenyuan Li
|
University of California Los Angeles
|
Informatics Resources for Liquid Biopsy Research |
Complete |
| U24 |
2019 |
Clifford Meyer
|
Dana-Farber Cancer Institute
|
Developing Informatics Technologies to Model Cancer Gene Regulation |
Complete |
| U01 |
2019 |
Andrew Janowczyk,
Anant Madabhushi
|
Case Western Reserve University
|
HistoTools: A Suite of Digital Pathology Tools for Quality Control, Annotation and Dataset Identification |
Complete |
| U24 |
2018 |
Jill Mesirov
|
University of California, San Diego
|
Supporting and Evolving Gene Set Enrichment Analysis and the Molecular Signatures Database for Cancer Research |
Complete |
| U01 |
2018 |
Jeremy Warner
|
Vanderbilt University Medical Center
|
Network Analysis for a Data-Driven Approach to Cancer Care |
Complete |
| U24 |
2018 |
Jeremy Goecks,
Michael Schatz
|
Oregon Health and Science University,
Johns Hopkins University
|
A Federated Galaxy for user-friendly large-scale cancer genomics research |
Complete |
| U01 |
2018 |
Linda Shapiro,
Joann Elmore
|
University of Washington
|
A Unified Machine Learning Package for Cancer Diagnosis |
Complete |
| U24 |
2018 |
Alexej Abyzov
|
Mayo Clinic Rochester
|
Detection of somatic, subclonal and mosaic CNVs from sequencing |
Complete |
| U24 |
2018 |
Bruce Faddegon
|
University of California, San Francisco
|
The TOPAS Tool for Particle Simulation, a Monte Carlo Simulation Tool for Physics, Biology and Clinical Research |
Complete |
| U01 |
2018 |
Lee Cooper,
Christopher Flowers,
Metin Gurcan
|
Emory University ,
Ohio State University
|
Informatics Tools for Quantitative Digital Pathology Profiling and Integrated Prognostic Modeling |
Complete |
| U24 |
2017 |
Guilherme Del Fiol,
Kensaku Kawamoto
|
University of Utah
|
Scalable Clinical Decision Support for Individualized Cancer Risk Management |
Complete |
| U24 |
2017 |
Ian Foster
|
University of Chicago
|
Building Protected Data Sharing Networks to Advance Cancer Risk Assessment and Treatment |
Complete |
| U24 |
2017 |
Nikolaus Schultz,
Ethan Cerami,
Chris Sander
|
Sloan Kettering Institute for Cancer Research
|
The cBioPortal for Cancer Genomics |
Complete |
| U24 |
2017 |
David Hanauer
|
University of Michigan
|
Advanced Development and Dissemination of EMERSE for Cancer Phenotyping from Medical Records |
Complete |
| U24 |
2017 |
Fred Prior,
Joel Saltz,
Ashish Sharma
|
University of Arkansas,
Stony Brook University,
Emory University
|
TCIA Sustainment and Scalability - Platforms for Quantitative Imaging Informatics in Precision Medicine |
Complete |
| U24 |
2017 |
Ian Holmes,
Lincoln Stein
|
University of California Berkeley
|
Developing the JBrowse Genome Browser to Visualize Structural Variants and Cancer Genomics Data |
Complete |
| U24 |
2016 |
Hua Xu,
Ping Yang
|
University of Texas Health Sci. Center, Houston,
Mayo Clinic - Jacksonville, Florida
|
Advancing Cancer Pharmacoepidemiology Research Through EHRs and Informatics |
Complete |
| U24 |
2016 |
Jill Mesirov,
James Robinson
|
University of California, San Diego
|
The Integrative Genomics Viewer (IGV): Visualization Supporting Cancer Research |
Complete |
| U24 |
2016 |
Gabor Marth,
Aaron Quinlan
|
University of Utah
|
Monitoring Tumor Subclonal Heterogeneity Over Time and Space |
Complete |
| U24 |
2016 |
Han Liang,
Gordon Mills
|
University of Texas MD Anderson Cancer Center
|
TCPA: an Integrated Bioinformatics Resource for Functional Cancer Proteomic Data/a> |
Complete |
| U24 |
2015 |
Anant Madabhushi,
Metin Nafi Gurcan ,
Anne Martel
|
Case Western Reserve University,
Ohio State University,
University of Toronto
|
Pathology Image Informatics Platform for Visualization, Analysis and Management |
Complete |
| U24 |
2014 |
Martin Morgan
|
Roswell Park Cancer Institute
|
Cancer Genomics: Integrative and Scalable Solutions in R / Bioconductor |
Complete |
| U24 |
2014 |
Trey Ideker
|
University of California, San Diego
|
NDEx - the Network Data Exchange, A Network Commons for Biologists |
Complete |
| U24 |
2013 |
Brian Haas
|
Broad Institute
|
Trinity: Transcriptome Assembly for Genetic and Functional Analysis of Cancer |
Complete |
| R21 |
2019 |
Eliezer Van Allen
|
Dana-Farber Cancer Institute
|
A Statistical Framework to Systematically Characterize Cancer Driver Mutations in Noncoding Genomic Regions |
Complete |
| R21 |
2019 |
Joshua Campbell
|
Boston University Medical Campus
|
Enhanced Deconvolution and Prediction of Mutational Signatures |
Complete |
| R21 |
2019 |
Paul Marjoram
|
University of Southern California
|
Conservation and Functional-Characterization of Tumor Methylation Sites |
Complete |
| R21 |
2019 |
Emilie Roncali
|
University of California at Davis
|
Personalized Dosimetry for Liver Cancer Radioembolization Using Fluid Dynamics Simulation |
Complete |
| R21 |
2019 |
Fuyong Xing,
Toby Cornish
|
University of Colorado Denver
|
Development and Dissemination of KiNet: A Novel Imaging Informatics Tool for Gastrointestinal and Pancreatic Neuroendocrine Tumors |
Complete |
| R21 |
2018 |
Guo-Qiang Zhang,
Licong Cui
|
University of Kentucky Research Foundation
|
An Ontology-driven Faceted Query Engine for the Kentucky Cancer Registry |
Complete |
| R21 |
2018 |
Kristen Naegle
|
University of Virginia
|
Inferring Kinase Activity Profiles from Phosphoproteomic Data |
Complete |
| R21 |
2018 |
Li-Xuan Qin
|
Sloan Kettering Institute for Cancer Research
|
Statistical Evaluation and Selection of Normalization Methods for microRNA Sequencing Data in Cancer Biomarker Studies |
Complete |
| R21 |
2018 |
Giuseppe Narzisi
|
New York Genome Center
|
Somatic variant calling and phasing using colored de Bruijn graphs in heterogeneous tumors |
Complete |
| R21 |
2018 |
Anjishnu Banerjee
|
Medical College of Wisconsin
|
Bayesian learning algorithms for identifying and classifying heterogeneity of cell types in variety of solid tumors |
Complete |
| U01 |
2018 |
Xiaole Shirley Liu
|
Dana-Farber Cancer Institute
|
Bioinformatics Technology to Characterize Tumor Infiltrating Immune Repertoires |
Complete |
| U01 |
2018 |
Kai Tan
|
Children's Hospital of Philadelphia
|
Tools for annotating mutations in the 3D cancer genome |
Complete |
| R21 |
2018 |
Min Jin Ha,
Veerabhadran Baladandayuthapani
|
University of Texas MD Anderson Cancer Center,
University of Michigan
|
Proteomic-based integrated subject-specific networks in cancer |
Complete |
| R21 |
2018 |
Corey W. Arnold
|
University of California, Los Angeles
|
Predicting the Presence of Clinically Significant Prostate Cancer using Multiparametric MRI and MR-US Fusion Biopsy |
Complete |
| Contract |
2017 |
Timothy Olsen,
Daniel Marcus
|
Radiologic, Inc.
Washington University in St. Louis
|
FDA Compliant Imaging Informatics for Cancer Research |
Complete |
| R21 |
2017 |
Nathalie Pochet
|
Brigham and Women's Hospital
|
Integrative Genomic Framework for Dissecting Regulatory Mechanisms Underlying Hepatocellular Carcinoma |
Complete |
| Contract |
2017 |
Trinity Urban,
Gordon Harris
|
Precision Imaging Metrics,
Harvard Medical School
|
Cloud-Hosted Clinical Trial Imaging Assessment and Workflow Management System |
Complete |
| R21 |
2017 |
Samir Parekh
|
Icahn School of Medicine at Mount Sinai
|
A network-based approach for personalized treatment of Multiple Myeloma |
Complete |
| R21 |
2017 |
Simina Boca
|
Georgetown University
|
CGDnet: Cancer Gene Drug Network: Using patient-specific drug-gene networks for recommending targeted cancer therapies |
Complete |
| U01 |
2017 |
Vincent Carey
|
Brigham and Women's Hospital
|
Accelerating Cancer Genomics with Cloud-Scale Bioconductor |
Complete |
| U01 |
2017 |
Daniel Crichton,
Raja Mazumder
|
Jet Propulsion Laboratory,
George Washington University
|
Integration of Comprehensive Cancer Mutation and Expression-Associated Data for Biomarker Evaluation and Discovery |
Complete |
| R01 |
2017 |
Jie Liang,
Yan-Yuan Tseng
|
University of Illinois at Chicago,
Wayne State University
|
Database and Tools for Functional Inference and Mechanistic Insight into Somatic Cancer Mutations |
Complete |
| R21 |
2017 |
William Evan Johnson
|
Boston University
|
An interactive analysis toolkit for single cell RNA-seq in cancer research |
Complete |
| R21 |
2016 |
Xiaodong Wu
|
University of Iowa
|
Developing Enabling PET-CT Image Analysis Tools for Predicting Response in Radiation Cancer Therapy |
Complete |
| R21 |
2016 |
Lydia Kavraki,
Gregory Lizee
|
Rice University
|
Structure-Based Selection of Tumor-Antigens for T-Cell Based Immunotherapy |
Complete |
| R21 |
2016 |
Dongjun Chung,
Linda Kelemen
|
Medical University of South Carolina
|
Algorithms for Literature-Guided Multi-Platform Identification of Cancer Subtypes |
Complete |
| U01 |
2016 |
Obi Griffith
|
Washington University in St. Louis
|
Development of Informatics Resources for Interpretation of Clinically Actionable Variants in Cancer |
Complete |
| U01 |
2016 |
Srinivas Chakra Chennubhotla,
Daryl Sarachan,
Lansing Taylor
|
University of Pittsburgh
|
Informatics Tools for Tumor Heterogeneity in Multiplexed Fluorescence Images |
Complete |
| U01 |
2016 |
Xinshu Grace Xiao
|
University of California, Los Angeles
|
Informatics Tools for Single-Nucleotide Analysis of Cancer RNA-Seq |
Complete |
| U24 |
2016 |
Timothy Griffin
|
University of Minnesota
|
A Galaxy-Based Multi-Omic Informatics Hub for Cancer Researchers |
Complete |
| U24 |
2016 |
Daniel Marcus,
Richard Wahl
|
Washington University in St. Louis
|
Integrative Imaging Informatics for Cancer Research |
Complete |
| U24 |
2016 |
Helen Parkinson
|
European Molecular Biology Laboratory
|
The PDX Integrator - Re-Purposing KOMP2 Informatics to Widely Disseminate Data from Patient Derived Xenografts |
Complete |
| U24 |
2016 |
Rachel Karchin
|
Johns Hopkins University
|
Informatics Tools for High-Throughput Analysis of Cancer Mutations |
Complete |
| U24 |
2015 |
Christos Davatzikos,
Despina Kontos
|
University of Pennsylvania
|
Cancer Imaging Phenomics Software Suite: Application to Brain and Breast Cancer |
Complete |
| U24 |
2015 |
John Weinstein,
Bradley Broom
|
University of Texas MD Anderson Cancer Center
|
Next-Generation Clustered Heat Maps for Fluent, Interactive Exploration of Omic Data |
Complete |
| U24 |
2015 |
David Andrew Gutman,
Lee Cooper
|
Emory University
|
Advanced Development of an Open-source Platform for Web-based Integrative Digital Image Analysis in Cancer |
Complete |
| U24 |
2015 |
Jill Mesirov
|
University of California, San Diego
|
GenePattern Notebooks for Cancer Research |
Complete |
| U24 |
2015 |
John Quackenbush,
Hugo Aerts
|
Dana-Farber Cancer Institute
|
Quantitative Radiomics System Decoding the Tumor Phenotype |
Complete |
| U01 |
2015 |
Lauren Jean O'Donnell
|
Harvard Medical School
|
Open Source Diffusion MRI Technology for Brain Cancer Research |
Complete |
| U01 |
2015 |
Kun Huang
|
Ohio State University
|
Informatics Links between Histological Features and Genetics in Cancer |
Complete |
| U01 |
2015 |
Michael Wigler,
Alexander Krasnitz
|
Cold Spring Harbor Laboratory
|
Computational Framework for Single-Cell Genomics of Tumors |
Complete |
| U24 |
2015 |
Gordon Harris
|
Harvard Medical School
|
Extensible Open-Source Zero-Footprint Web Viewer for Oncologic Imaging Research |
Complete |
| U01 |
2014 |
Benjamin Berman
|
Cedars-Sinai Medical Center
|
Software Tools For Regulatory Analysis of Large Cancer Methylome Datasets |
Complete |
| U01 |
2014 |
Bobbie-Jo Mary Webb-Robertson
|
Pacific Northwest National Laboratory
|
Interactive Informatics Resource for Research-driven C |
Complete |
| U24 |
2014 |
Bruce Rosen,
Jayashree Kalpathy-Cramer
|
Massachusetts General Hospital
|
Informatics Tools for Optimized Imaging Biomarkers for Cancer Research & Discovery |
Complete |
| U24 |
2014 |
Joel Saltz
|
Stony Brook University
|
Tools to Analyze Morphology and Spatially Mapped Molecular Data |
Complete |
| U24 |
2014 |
Guergana Savova
|
Boston Children's Hospital,
University of Pittsburgh
|
Cancer Deep Phenotyping Extraction from Electronic Medical Records |
Complete |
| R01 |
2014 |
Laura Rozek,
Maureen Sartor
|
University of Michigan
|
Integrative Epigenomic/Genomic Profiling and Biomarker Discovery in HPV+ and HPV- |
Complete |
| U01 |
2014 |
Guoqian Jiang
|
Mayo Clinic - Rochester, Minnesota
|
caCDE-QA: A Quality Assurance Platform for Cancer Study Common Data Elements |
Complete |
| U01 |
2014 |
Hong Yu
|
University of Massachusetts Medical School
|
EMR Adverse Drug Event Detection for Pharmacovigilance |
Complete |
| U01 |
2014 |
Jingshan Huang
|
University of South Alabama
|
OmniSearch: A Semantic Search Tool for Discovering MicroRNAs' Critical Roles in Human Cancer |
Complete |
| U01 |
2013 |
Shirley Liu
|
Dana-Farber Cancer Institute
|
Developing Informatics Technologies to Model Cancer |
Complete |
| U01 |
2013 |
Rachel Karchin
|
Johns Hopkins University
|
Informatics Tools for High-Throughput Analysis of Cancer Mutations |
Complete |
| U01 |
2013 |
Elmer Bernstam,
Funda Meric-Bernstam
|
University of Texas MD Anderson Cancer Center,
University of Texas Health Sci. Center, Houston
|
Informatics to Enable Routine Personalized Cancer Therapy |
Complete |
| U24 |
2013 |
Michael Becich
|
University of Pittsburgh
|
Advanced Development of TIES-Enhancing Access to Tissue for Cancer Research |
Complete |
| U24 |
2013 |
David Haussler
|
University of California, Santa Cruz
|
Cloud Based Resource for Data Hosting, Visualization and Analysis Using UCSC Cancer Genomics Browser |
Complete |
| R01 |
2013 |
Joshua Stuart
|
University of California, Santa Cruz
|
ESCE: Discovering Molecular Processes |
Complete |
| U24 |
2013 |
Ron Kikinis,
Andrey Fedorov
|
Brigham and Women's Hospital,
Harvard Medical School
|
Quantitative Image Informatics for Cancer Research (QIICR) |
Complete |
| R01 |
2013 |
Hiroyuki Yoshida
|
Massachusetts General Hospital
|
Cloud-Computer-Aided Diagnostic Imaging Decision Support System |
Complete |
| R01 |
2013 |
William Noble
|
University of Washington
|
Interpreting Massive Genomic Data Sets via Summarization |
Complete |
| U01 |
2011 |
John Quackenbush
|
Dana-Farber Cancer Institute
|
MeV: Software for Next Generation Genomic Data Analysis |
Complete |
